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BioC experimental data: CHECK report for charmData on moscato2

This page was generated on 2013-10-08 16:07:24 -0700 (Tue, 08 Oct 2013).

Package 27/156HostnameOS / ArchBUILDCHECKBUILD BIN
charmData 0.99.8
Martin Aryee
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/charmData
Last Changed Rev: 2491 / Revision: 2510
Last Changed Date: 2013-10-04 19:22:14 -0700 (Fri, 04 Oct 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: charmData
Version: 0.99.8
Command: rm -rf charmData.buildbin-libdir && mkdir charmData.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=charmData.buildbin-libdir charmData_0.99.8.tar.gz >charmData-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=charmData.buildbin-libdir --install="check:charmData-install.out" --force-multiarch --no-vignettes --timings charmData_0.99.8.tar.gz && mv charmData.buildbin-libdir/* charmData.Rcheck/ && rmdir charmData.buildbin-libdir
StartedAt: 2013-10-08 13:02:55 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 13:15:33 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 757.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: charmData.Rcheck
Warnings: 3

Command output

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/charmData.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'charmData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'charmData' version '0.99.8'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'charmData' can be installed ... WARNING
Found the following significant warnings:
  Warning: package 'fields' was built under R version 3.0.2
  Warning: package 'fields' was built under R version 3.0.2
See 'E:/biocbld/bbs-2.12-data-experiment/meat/charmData.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 48.6Mb
  sub-directories of 1Mb or more:
    data  48.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  '136421_532.xys' '136421_635.xys' '136600_532.xys' '136600_635.xys'
  '3788602_532.xys' '3788602_635.xys' '3822402_532.xys'
  '3822402_635.xys' '5739902_532.xys' '5739902_635.xys'
  '5875602_532.xys' '5875602_635.xys'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
** running examples for arch 'x64' ... [14s] OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/charmData.Rcheck/00check.log'
for details.

charmData.Rcheck/00install.out:


install for i386

* installing *source* package 'charmData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning: package 'fields' was built under R version 3.0.2

install for x64

* installing *source* package 'charmData' ...
** testing if installed package can be loaded
Warning: package 'fields' was built under R version 3.0.2
* MD5 sums
packaged installation of 'charmData' as charmData_0.99.8.zip
* DONE (charmData)