Package: RGalaxy

Version: 1.3.7

Command: rm -rf RGalaxy.buildbin-libdir && mkdir RGalaxy.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RGalaxy.buildbin-libdir RGalaxy_1.3.7.tar.gz >RGalaxy-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=RGalaxy.buildbin-libdir --install="check:RGalaxy-install.out" --force-multiarch --no-vignettes --timings RGalaxy_1.3.7.tar.gz && mv RGalaxy.buildbin-libdir/* RGalaxy.Rcheck/ && rmdir RGalaxy.buildbin-libdir

StartedAt: 2013-03-25 04:32:00 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 04:33:46 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 105.7 seconds

RetCode: 0

Status:  OK

CheckDir: RGalaxy.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/RGalaxy.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RGalaxy/DESCRIPTION' ... OK
* this is package 'RGalaxy' version '1.3.7'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'RSclient'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RGalaxy' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [10s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
probeLookup 4.95   0.09    5.04
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R' [11s]
 [11s] OK
** running tests for arch 'x64'
  Running 'runTests.R' [10s]
 [10s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/RGalaxy.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'RGalaxy' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RGalaxy' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RGalaxy' as RGalaxy_1.3.7.zip
* DONE (RGalaxy)