Package: AffyCompatible

Version: 1.19.4

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch AffyCompatible_1.19.4.tar.gz

StartedAt: 2013-03-25 00:59:10 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:03:14 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 244.0 seconds

RetCode: 0

Status:  OK

CheckDir: AffyCompatible.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/AffyCompatible.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.19.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'AffyCompatible' can be installed ... [44s/46s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [26s/34s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
NetAffxResource-class 13.415  0.268  21.247
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MAGEAndARR.Rnw' 
   'NetAffxResource.Rnw' 
** testing if installed package can be loaded
* DONE (AffyCompatible)

name	user	system	elapsed
AffyCompatible-class	0.007	0.006	0.013
NetAffxResource-class	13.415	0.268	21.247
readArr	0.750	0.047	0.801
readMage	3.002	0.016	3.018
readNetAffx	0.002	0.005	0.007
readXml	0.127	0.013	0.140
xclass	0.176	0.018	0.193
zzz-ARRCompatibility-class	0.013	0.020	0.033
zzz-DTTCompatibility-class	0.537	0.518	1.068
zzz-NetAffxCompatibility-class	0.017	0.013	0.030