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splicegear

1.9.0

Laurent
Last Changed Date: 2007-05-11 21:56:41 -0700
Last Changed Rev: 24616
lamb1 Linux (SUSE 10.1) x86_64 [ OK ] WARNINGS 
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK  WARNINGS  OK 
Package: splicegear
Version: 1.9.0
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build splicegear
RetCode: 0
Time: 8.5 seconds
Status: OK
PackageFile: splicegear_1.9.0.tar.gz

Command output

* checking for file 'splicegear/DESCRIPTION' ... OK
* preparing 'splicegear':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'splicegear' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Warning: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead
Warning: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead
Warning: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead
Warning: The exprSet class is deprecated, use ExpressionSet instead
** help
Note: unmatched right brace in 'grid.helpers' on or after line 28
Note: unmatched right brace in 'plot.SpliceSitesGenomic' on or after line 6
 >>> Building/Updating help pages for package 'splicegear'
     Formats: text html latex example 
  Probes-class                      text    html    latex   example
  SpliceExprSet-class               text    html    latex   example
  SpliceSites-class                 text    html    latex   example
  SpliceSitesGenomic-class          text    html    latex   example
  as.data.frame.SpliceExprSet       text    html    latex   example
  barplot.SpliceSites               text    html    latex   example
  buildSpliceSites                  text    html    latex   example
  getRelSignStrength                text    html    latex   example
  grid.helpers                      text    html    latex
  grid.plot.SpliceSites             text    html    latex   example
  isProbeOnSpliceSite               text    html    latex   example
  matchprobes2Probes                text    html    latex
  plot.SpliceExprSet                text    html    latex   example
  plot.SpliceSites                  text    html    latex   example
  plot.SpliceSitesGenomic           text    html    latex   example
  sort.SpliceExprSet                text    html    latex   example
  spliceset                         text    html    latex   example
  split.SpliceSites                 text    html    latex   example
** building package indices ...
* DONE (splicegear)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'splicegear_1.9.0.tar.gz'