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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 163/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
pairseqsim1.9.3Witold WolskiLast Changed Date: 2007-06-10 10:22:32 -0700 Last Changed Rev: 25301 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ ERROR ] | skipped | |
wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: pairseqsim |
Version: 1.9.3 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build pairseqsim |
RetCode: 1 |
Time: 5.5 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'pairseqsim/DESCRIPTION' ... OK * preparing 'pairseqsim': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... NO * use '--force' to overwrite the existing 'INDEX' * installing the package to re-build vignettes * Installing *source* package 'pairseqsim' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c align.c -o align.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c basic.c -o basic.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c callalign.c -o callalign.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o pairseqsim.so align.o basic.o callalign.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** help Note: unmatched right brace in 'EPAM110' on or after line 80 Note: unmatched right brace in 'Submatrix-class' on or after line 14 >>> Building/Updating help pages for package 'pairseqsim' Formats: text html latex example AAAlignment-class text html latex example AAAlphabet-class text html latex example AASequence-class text html latex example AASequence text html latex example AASequenceList-class text html latex example EPAM110 text html latex example Submatrix-class text html latex listdist-methods text html latex readFasta-methods text html latex example salign-methods text html latex example sequlist text html latex example testalign-methods text html latex ** building package indices ... * DONE (pairseqsim) * creating vignettes ... ERROR Creating a new generic function for "levels" in "pairseqsim" Creating a new generic function for "frequency" in "pairseqsim" Creating a new generic function for "summary" in "pairseqsim" Refusing to claim no (or even less memmory ... !