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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 140/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
matchprobes1.9.10Biocore Team c/o BioC user listLast Changed Date: 2007-08-20 09:33:20 -0700 Last Changed Rev: 26527 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: matchprobes |
Version: 1.9.10 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check matchprobes_1.9.10.tar.gz |
RetCode: 0 |
Time: 429.8 seconds |
Status: OK |
CheckDir: matchprobes.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/matchprobes.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'matchprobes/DESCRIPTION' ... OK * this is package 'matchprobes' version '1.9.10' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'matchprobes' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'print.probetable': print.probetable The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating matchprobes-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating matchprobes-manual.tex ... OK * checking matchprobes-manual.tex ... OK
matchprobes.Rcheck/00install.out:
* Installing *source* package 'matchprobes' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c matchprobes.c -o matchprobes.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c strutils.c -o strutils.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o matchprobes.so matchprobes.o strutils.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore ** help >>> Building/Updating help pages for package 'matchprobes' Formats: text html latex example basecontent text html latex example combineAffyBatch text html latex example complementSeq text html latex example getProbeDataAffy text html latex example getProbeData_1lq text html latex example longestConsecutive text html latex example makeProbePackage text html latex example matchprobes text html latex example print.probetable text html latex example reverseSeq text html latex example ** building package indices ... * DONE (matchprobes)