Package: maSigPro

Version: 1.9.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check maSigPro_1.9.1.tar.gz

RetCode: 0

Time: 81.9 seconds

Status: WARNINGS

CheckDir: maSigPro.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/maSigPro.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.9.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
T.fit: no visible binding for '<<-' assignment to 'dis'
T.fit: no visible binding for global variable 'dis'
stepback: no visible binding for global variable 'dis'
stepfor: no visible binding for global variable 'dis'
two.ways.stepback: no visible binding for global variable 'dis'
two.ways.stepfor: no visible binding for global variable 'dis'
Found possibly global 'T' or 'F' in the following functions:
  PlotGroups see.genes
* checking Rd files ... WARNING
Rd files with unknown encoding:
  PlotGroups.Rd
  PlotProfiles.Rd
  T.fit.Rd
  get.siggenes.Rd
  maSigPro.Rd
  make.design.matrix.Rd
  p.vector.Rd
  reg.coeffs.Rd
  see.genes.Rd
  stepback.Rd
  stepfor.Rd
  two.ways.stepback.Rd
  two.ways.stepfor.Rd

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating maSigPro-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maSigPro-manual.tex ... OK
* checking maSigPro-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.1-bioc/meat/maSigPro.Rcheck/00check.log
for details

* Installing *source* package 'maSigPro' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'maSigPro'
     Formats: text html latex example 
  PlotGroups                        text    html    latex   example
  PlotProfiles                      text    html    latex   example
  T.fit                             text    html    latex   example
  average.rows                      text    html    latex   example
  data.abiotic                      text    html    latex   example
  edesign.OD                        text    html    latex   example
  edesign.abiotic                   text    html    latex   example
  edesignCT                         text    html    latex   example
  edesignDR                         text    html    latex   example
  get.siggenes                      text    html    latex   example
  i.rank                            text    html    latex   example
  maSigPro                          text    html    latex   example
  make.design.matrix                text    html    latex   example
  p.vector                          text    html    latex   example
  position                          text    html    latex   example
  reg.coeffs                        text    html    latex   example
  see.genes                         text    html    latex   example
  stepback                          text    html    latex   example
  stepfor                           text    html    latex   example
  suma2Venn                         text    html    latex   example
  two.ways.stepback                 text    html    latex   example
  two.ways.stepfor                  text    html    latex   example
** building package indices ...
* DONE (maSigPro)