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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 15/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
altcdfenvs1.11.0Laurent GautierLast Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | [ OK ] | OK |
Package: altcdfenvs |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check altcdfenvs_1.11.0.tar.gz |
RetCode: 0 |
Time: 336.2 seconds |
Status: OK |
CheckDir: altcdfenvs.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/altcdfenvs.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-10 r42465) * checking for file 'altcdfenvs/DESCRIPTION' ... OK * this is package 'altcdfenvs' version '1.11.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'altcdfenvs' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.CdfEnvAffy': plot.CdfEnvAffy S3 methods shown with full name in documentation object 'unique.CdfEnvAffy': unique.CdfEnvAffy S3 methods shown with full name in documentation object 'read.FASTA.entry': print.FASTA The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * creating altcdfenvs-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating altcdfenvs-manual.tex ... OK * checking altcdfenvs-manual.tex ... OK
altcdfenvs.Rcheck/00install.out:
* Installing *source* package 'altcdfenvs' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: matchprobes Loading required package: makecdfenv Creating a new generic function for "plot" in "altcdfenvs" ** help Note: unmatched right brace in 'cdfenvEx' on or after line 21 >>> Building/Updating help pages for package 'altcdfenvs' Formats: text html latex example CdfEnvAffy-class text html latex example appendCdfEnvAffy text html latex example cdfenv text html latex example cdfenvEx text html latex example copyCdfEnvAffy text html latex countduplicated text html latex example geneNames text html latex getxy.probeseq text html latex example index2xy text html latex example indexProbes.CdfEnvAffy text html latex example plot.CdfEnvAffy text html latex example removeIndex text html latex example unique.CdfEnvAffy text html latex example utils.FASTA text html latex example validAffyBatch text html latex example ** building package indices ... * DONE (altcdfenvs)