highthroughputassays
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see highthroughputassays.
Using Bioconductor with High Throughput Assays
Bioconductor version: 3.9
The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowViz` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.
Author: Bioconductor Package Maintainer [aut, cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("highthroughputassays")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("highthroughputassays")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("highthroughputassays")| Using Bioconductor with High Throughput Assays | HTML | R Script |
Details
| biocViews | ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), flowCore, flowStats, flowViz |
| Imports | |
| System Requirements | |
| URL | https://www.bioconductor.org/help/workflows/highthroughputassays/ |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | highthroughputassays_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/highthroughputassays |
| Source Repository (Developer Access) | git clone [email protected]:packages/highthroughputassays |
| Package Short Url | https://bioconductor.org/packages/highthroughputassays/ |
| Package Downloads Report | Download Stats |