eQTL
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see eQTL.
Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x
Bioconductor version: 3.9
This workflow focuses on searches for eQTL in cis, so that DNA variants local to the gene assayed for expression are tested for association.
Author: Vincent Carey [aut, cre]
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
citation("eQTL")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("eQTL")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eQTL")| Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x | HTML | R Script |
Details
| biocViews | GenomicVariantsWorkflow, Workflow |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), GGdata, GGtools, GenomeInfoDb, S4Vectors, SNPlocs.Hsapiens.dbSNP144.GRCh37, bibtex, biglm, data.table, doParallel, foreach, knitcitations, lumi, lumiHumanAll.db, parallel, rmeta, scatterplot3d, snpStats, grid, yri1kgv |
| Imports | |
| System Requirements | |
| URL | https://www.bioconductor.org/help/workflows/eQTL/ |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | eQTL_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/eQTL |
| Source Repository (Developer Access) | git clone [email protected]:packages/eQTL |
| Package Short Url | https://bioconductor.org/packages/eQTL/ |
| Package Downloads Report | Download Stats |