vtpnet
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see vtpnet.
variant-transcription factor-phenotype networks
Bioconductor version: 3.9
variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("vtpnet")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("vtpnet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("vtpnet")| vtpnet: variant-transcription factor-network tools | R Script | |
| Reference Manual |
Details
| biocViews | Network, Software |
| Version | 0.24.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | MotifDb, VariantAnnotation, Rgraphviz |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | vtpnet_0.24.0.tar.gz |
| Windows Binary | vtpnet_0.24.0.zip |
| Mac OS X 10.11 (El Capitan) | vtpnet_0.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/vtpnet |
| Source Repository (Developer Access) | git clone [email protected]:packages/vtpnet |
| Bioc Package Browser | https://code.bioconductor.org/browse/vtpnet/ |
| Package Short Url | https://bioconductor.org/packages/vtpnet/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |