tspair
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see tspair.
Top Scoring Pairs for Microarray Classification
Bioconductor version: 3.9
These functions calculate the pair of genes that show the maximum difference in ranking between two user specified groups. This "top scoring pair" maximizes the average of sensitivity and specificity over all rank based classifiers using a pair of genes in the data set. The advantage of classifying samples based on only the relative rank of a pair of genes is (a) the classifiers are much simpler and often more interpretable than more complicated classification schemes and (b) if arrays can be classified using only a pair of genes, PCR based tests could be used for classification of samples. See the references for the tspcalc() function for references regarding TSP classifiers.
Author: Jeffrey T. Leek <jtleek at jhu.edu>
Maintainer: Jeffrey T. Leek <jtleek at jhu.edu>
citation("tspair")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tspair")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tspair")| tspTutorial | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (15 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), Biobase(>= 2.4.0) |
| Imports | |
| System Requirements | |
| URL |
See More
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| Linking To | |
| Enhances | |
| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tspair_1.42.0.tar.gz |
| Windows Binary | tspair_1.42.0.zip |
| Mac OS X 10.11 (El Capitan) | tspair_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tspair |
| Source Repository (Developer Access) | git clone [email protected]:packages/tspair |
| Bioc Package Browser | https://code.bioconductor.org/browse/tspair/ |
| Package Short Url | https://bioconductor.org/packages/tspair/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |