survtype
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see survtype.
Subtype Identification with Survival Data
Bioconductor version: 3.9
Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.
Author: Dongmin Jung
Maintainer: Dongmin Jung <dmdmjung at gmail.com>
citation("survtype")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("survtype")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("survtype")| survtype | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Coverage, GeneExpression, Sequencing, Software, StatisticalMethod, Survival |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | Artistic-2.0 |
| Depends | SummarizedExperiment, pheatmap, survival, survminer, clustvarsel, stats, utils |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | maftools, scales, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | survtype_1.0.0.tar.gz |
| Windows Binary | survtype_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | survtype_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/survtype |
| Source Repository (Developer Access) | git clone [email protected]:packages/survtype |
| Bioc Package Browser | https://code.bioconductor.org/browse/survtype/ |
| Package Short Url | https://bioconductor.org/packages/survtype/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |