spikeLI
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see spikeLI.
Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool
Bioconductor version: 3.9
SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).
Author: Delphine Baillon, Paul Leclercq <paulleclercq at hotmail.com>, Sarah Ternisien, Thomas Heim, Enrico Carlon <enrico.carlon at fys.kuleuven.be>
Maintainer: Enrico Carlon <enrico.carlon at fys.kuleuven.be>
citation("spikeLI")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spikeLI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spikeLI")| spikeLI | |
| Reference Manual |
Details
| biocViews | Microarray, QualityControl, Software |
| Version | 2.44.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | graphics, grDevices, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spikeLI_2.44.0.tar.gz |
| Windows Binary | spikeLI_2.44.0.zip |
| Mac OS X 10.11 (El Capitan) | spikeLI_2.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spikeLI |
| Source Repository (Developer Access) | git clone [email protected]:packages/spikeLI |
| Bioc Package Browser | https://code.bioconductor.org/browse/spikeLI/ |
| Package Short Url | https://bioconductor.org/packages/spikeLI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |