rmelting

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rmelting.

R Interface to MELTING 5


Bioconductor version: 3.9

R interface to the MELTING 5 program () to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Author: J. Aravind [aut, cre] , G. K. Krishna [aut], Bob Rudis [ctb] (melting5jars), Nicolas Le Novère [ctb] (MELTING 5 Java Library), Marine Dumousseau [ctb] (MELTING 5 Java Library), William John Gowers [ctb] (MELTING 5 Java Library)

Maintainer: J. Aravind <j.aravind at icar.gov.in>

Citation (from within R, enter citation("rmelting")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rmelting")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rmelting")
Tutorial PDF
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, Cheminformatics, Software
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-2 | GPL-3
Depends R (>= 3.6)
Imports Rdpack, rJava (>= 0.5-0)
System Requirements Java
URL https://github.com/aravind-j/rmelting https://aravind-j.github.io/PGRdup/
Bug Reports https://github.com/aravind-j/rmelting/issues
See More
Suggests readxl, knitr, rmarkdown, reshape2, pander, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rmelting_1.0.0.tar.gz
Windows Binary rmelting_1.0.0.zip
Mac OS X 10.11 (El Capitan) rmelting_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rmelting
Source Repository (Developer Access) git clone [email protected]:packages/rmelting
Bioc Package Browser https://code.bioconductor.org/browse/rmelting/
Package Short Url https://bioconductor.org/packages/rmelting/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive