rain
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rain.
Rhythmicity Analysis Incorporating Non-parametric Methods
Bioconductor version: 3.9
This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising 10-100 measurements. As it does not assume expect any distinct waveform it is optimal or detecting oscillating behavior (e.g. circadian or cell cycle) in e.g. genome- or proteome-wide biological measurements such as: micro arrays, proteome mass spectrometry, or metabolome measurements.
Author: Paul F. Thaben, Pål O. Westermark
Maintainer: Paul F. Thaben <paul.thaben at charite.de>
citation("rain")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rain")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rain")| Rain Usage | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, Microarray, MultipleComparison, Proteomics, Software, SystemsBiology, TimeCourse |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), gmp, multtest |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | lattice, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rain_1.18.0.tar.gz |
| Windows Binary | rain_1.18.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | rain_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rain |
| Source Repository (Developer Access) | git clone [email protected]:packages/rain |
| Bioc Package Browser | https://code.bioconductor.org/browse/rain/ |
| Package Short Url | https://bioconductor.org/packages/rain/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |