rGREAT
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rGREAT.
Client for GREAT Analysis
Bioconductor version: 3.9
This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("rGREAT")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rGREAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rGREAT")| Analyze with GREAT | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage, GO, GeneSetEnrichment, GenomeAnnotation, Pathways, Sequencing, Software, WholeGenome |
| Version | 1.16.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.1.2), GenomicRanges, IRanges, methods |
| Imports | rjson, GetoptLong (>= 0.0.9), RCurl, utils, stats |
| System Requirements | |
| URL | https://github.com/jokergoo/rGREAT http://great.stanford.edu/public/html/ |
See More
| Suggests | testthat (>= 0.3), knitr, circlize (>= 0.4.8), rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | profileplyr |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rGREAT_1.16.1.tar.gz |
| Windows Binary | rGREAT_1.16.1.zip |
| Mac OS X 10.11 (El Capitan) | rGREAT_1.16.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rGREAT |
| Source Repository (Developer Access) | git clone [email protected]:packages/rGREAT |
| Bioc Package Browser | https://code.bioconductor.org/browse/rGREAT/ |
| Package Short Url | https://bioconductor.org/packages/rGREAT/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |