proteoQC
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteoQC.
An R package for proteomics data quality control
Bioconductor version: 3.9
This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.
Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>
Maintainer: Bo Wen <wenbo at genomics.cn>
citation("proteoQC")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("proteoQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proteoQC")| 00 proteoQC introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | LGPL-2 |
| Depends | R (>= 3.0.0), XML, VennDiagram, MSnbase |
| Imports | rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown |
| System Requirements | |
| URL | https://github.com/wenbostar/proteoQC |
See More
| Suggests | RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | proteoQC_1.20.0.tar.gz |
| Windows Binary | proteoQC_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | proteoQC_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/proteoQC |
| Source Repository (Developer Access) | git clone [email protected]:packages/proteoQC |
| Bioc Package Browser | https://code.bioconductor.org/browse/proteoQC/ |
| Package Short Url | https://bioconductor.org/packages/proteoQC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |