pcxn
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pcxn.
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Bioconductor version: 3.9
Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections (MSigDB H hallmark, MSigDB C2 Canonical pathways, MSigDB C5 GO BP and Pathprint).
Author: Sokratis Kariotis, Yered Pita-Juarez, Winston Hide, Wenbin Wei
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
citation("pcxn")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pcxn")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pcxn")| pcxn | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, OneChannelData, PathwayInteractionDatabase, Software |
| Version | 2.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4), pcxnData |
| Imports | methods, grDevices, utils, pheatmap |
| System Requirements | |
| URL |
See More
| Suggests | igraph, annotate, org.Hs.eg.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pcxnData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pcxn_2.6.0.tar.gz |
| Windows Binary | pcxn_2.6.0.zip |
| Mac OS X 10.11 (El Capitan) | pcxn_2.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pcxn |
| Source Repository (Developer Access) | git clone [email protected]:packages/pcxn |
| Bioc Package Browser | https://code.bioconductor.org/browse/pcxn/ |
| Package Short Url | https://bioconductor.org/packages/pcxn/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |