miRLAB
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see miRLAB.
Dry lab for exploring miRNA-mRNA relationships
Bioconductor version: 3.9
Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.
Author: Thuc Duy Le, Junpeng Zhang, Mo Chen, Vu Viet Hoang Pham
Maintainer: Thuc Duy Le <Thuc.Le at unisa.edu.au>
citation("miRLAB")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRLAB")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRLAB")| miRLAB | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Network, NetworkInference, Software, miRNA |
| Version | 1.14.3 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>=2) |
| Depends | |
| Imports | methods, stats, utils, RCurl, httr, stringr, Hmisc, energy, entropy, Roleswitch, gplots, glmnet, impute, limma, pcalg, TCGAbiolinks, dplyr, SummarizedExperiment, ctc, heatmap.plus, InvariantCausalPrediction, Category, GOstats, org.Hs.eg.db |
| System Requirements | |
| URL | https://github.com/pvvhoang/miRLAB |
See More
| Suggests | knitr, BiocGenerics, AnnotationDbi, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miRLAB_1.14.3.tar.gz |
| Windows Binary | miRLAB_1.14.3.zip |
| Mac OS X 10.11 (El Capitan) | miRLAB_1.14.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miRLAB |
| Source Repository (Developer Access) | git clone [email protected]:packages/miRLAB |
| Bioc Package Browser | https://code.bioconductor.org/browse/miRLAB/ |
| Package Short Url | https://bioconductor.org/packages/miRLAB/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |