mdqc
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see mdqc.
Mahalanobis Distance Quality Control for microarrays
Bioconductor version: 3.9
MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.
Author: Justin Harrington
Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>
citation("mdqc")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mdqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mdqc")| Introduction to MDQC | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, QualityControl, Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.2.1), cluster, MASS |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | arrayMvout |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mdqc_1.46.0.tar.gz |
| Windows Binary | mdqc_1.46.0.zip |
| Mac OS X 10.11 (El Capitan) | mdqc_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mdqc |
| Source Repository (Developer Access) | git clone [email protected]:packages/mdqc |
| Bioc Package Browser | https://code.bioconductor.org/browse/mdqc/ |
| Package Short Url | https://bioconductor.org/packages/mdqc/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |