matchBox
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see matchBox.
Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
Bioconductor version: 3.9
The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.
Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
citation("matchBox")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("matchBox")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matchBox")| Working with the matchBox package | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, Microarray, MultipleComparison, Software, Visualization |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.8.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | matchBox_1.26.0.tar.gz |
| Windows Binary | matchBox_1.26.0.zip |
| Mac OS X 10.11 (El Capitan) | matchBox_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/matchBox |
| Source Repository (Developer Access) | git clone [email protected]:packages/matchBox |
| Bioc Package Browser | https://code.bioconductor.org/browse/matchBox/ |
| Package Short Url | https://bioconductor.org/packages/matchBox/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |