maser
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see maser.
Mapping Alternative Splicing Events to pRoteins
Bioconductor version: 3.9
This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.
Author: Diogo F.T. Veiga [aut, cre]
Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>
Citation (from within R, enter
citation("maser")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("maser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("maser")| Introduction | HTML | R Script |
| Mapping protein features to splicing events | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AlternativeSplicing, Software, Transcriptomics, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0), ggplot2, GenomicRanges |
| Imports | dplyr, rtracklayer, reshape2, Gviz, DT, GenomeInfoDb, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table |
| System Requirements | |
| URL | https://github.com/DiogoVeiga/maser |
| Bug Reports | https://github.com/DiogoVeiga/maser/issues |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle, AnnotationHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | maser_1.2.0.tar.gz |
| Windows Binary | maser_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | maser_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/maser |
| Source Repository (Developer Access) | git clone [email protected]:packages/maser |
| Bioc Package Browser | https://code.bioconductor.org/browse/maser/ |
| Package Short Url | https://bioconductor.org/packages/maser/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |