les
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see les.
Identifying Differential Effects in Tiling Microarray Data
Bioconductor version: 3.9
The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.
Author: Julian Gehring, Clemens Kreutz, Jens Timmer
Maintainer: Julian Gehring <jg-bioc at gmx.com>
citation("les")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("les")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("les")| Introduction to the les package: Identifying Differential Effects in Tiling Microarray Data with the Loci of Enhanced Significance Framework | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ChIPchip, DNAMethylation, DifferentialExpression, Microarray, Software, Transcription |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.13.2), methods, graphics, fdrtool |
| Imports | boot, gplots, RColorBrewer |
| System Requirements | |
| URL |
See More
| Suggests | Biobase, limma |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | GSRI |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | les_1.34.0.tar.gz |
| Windows Binary | les_1.34.0.zip |
| Mac OS X 10.11 (El Capitan) | les_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/les |
| Source Repository (Developer Access) | git clone [email protected]:packages/les |
| Bioc Package Browser | https://code.bioconductor.org/browse/les/ |
| Package Short Url | https://bioconductor.org/packages/les/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |