iCheck
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iCheck.
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
Bioconductor version: 3.9
QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.
Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]
Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>
citation("iCheck")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iCheck")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iCheck")| iCheck | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.2.0), Biobase, lumi, gplots |
| Imports | stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iCheck_1.14.0.tar.gz |
| Windows Binary | iCheck_1.14.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | iCheck_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iCheck |
| Source Repository (Developer Access) | git clone [email protected]:packages/iCheck |
| Bioc Package Browser | https://code.bioconductor.org/browse/iCheck/ |
| Package Short Url | https://bioconductor.org/packages/iCheck/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |