hierinf
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see hierinf.
Hierarchical Inference
Bioconductor version: 3.9
Tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.
Author: Claude Renaux [aut, cre], Laura Buzdugan [aut], Markus Kalisch [aut], Peter Bühlmann [aut]
Maintainer: Claude Renaux <renaux at stat.math.ethz.ch>
citation("hierinf")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hierinf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hierinf")| vignette-hierinf.Rnw | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Clustering, GenomeWideAssociation, LinkageDisequilibrium, Regression, SNP, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | fmsb, glmnet, methods, parallel, stats |
| System Requirements | |
| URL |
See More
| Suggests | knitr, MASS, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hierinf_1.2.0.tar.gz |
| Windows Binary | hierinf_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | hierinf_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hierinf |
| Source Repository (Developer Access) | git clone [email protected]:packages/hierinf |
| Bioc Package Browser | https://code.bioconductor.org/browse/hierinf/ |
| Package Short Url | https://bioconductor.org/packages/hierinf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |