genefu
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see genefu.
Computation of Gene Expression-Based Signatures in Breast Cancer
Bioconductor version: 3.9
Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.
Author: Deena M.A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schroeder, Laia Pare, Joel S. Parker, Aleix Prat, and Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>
citation("genefu")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genefu")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genefu")| genefu An Introduction (HowTo) | R Script | |
| Reference Manual | ||
| README | Text |
Details
| biocViews | Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization |
| Version | 2.16.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | Artistic-2.0 |
| Depends | survcomp, mclust, limma, biomaRt, iC10, AIMS, R (>= 2.10) |
| Imports | amap, impute |
| System Requirements | |
| URL | http://www.pmgenomics.ca/bhklab/software/genefu |
See More
| Suggests | GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | consensusOV |
| Suggests Me | breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genefu_2.16.0.tar.gz |
| Windows Binary | genefu_2.16.0.zip |
| Mac OS X 10.11 (El Capitan) | genefu_2.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genefu |
| Source Repository (Developer Access) | git clone [email protected]:packages/genefu |
| Bioc Package Browser | https://code.bioconductor.org/browse/genefu/ |
| Package Short Url | https://bioconductor.org/packages/genefu/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |