focalCall
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see focalCall.
Detection of focal aberrations in DNA copy number data
Bioconductor version: 3.9
Detection of genomic focal aberrations in high-resolution DNA copy number data
Author: Oscar Krijgsman
Maintainer: Oscar Krijgsman <oscarkrijgsman at gmail.com>
Citation (from within R, enter
citation("focalCall")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("focalCall")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("focalCall")| focalCall | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Microarray, Preprocessing, Sequencing, Software, Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10.0), CGHcall |
| Imports | |
| System Requirements | |
| URL | https://github.com/OscarKrijgsman/focalCall |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | focalCall_1.18.0.tar.gz |
| Windows Binary | focalCall_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | focalCall_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/focalCall |
| Source Repository (Developer Access) | git clone [email protected]:packages/focalCall |
| Bioc Package Browser | https://code.bioconductor.org/browse/focalCall/ |
| Package Short Url | https://bioconductor.org/packages/focalCall/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |