flowMap
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowMap.
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
Bioconductor version: 3.9
flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.
Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>
citation("flowMap")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowMap")| Mapping cell populations in flow cytometry data flowMap-FR | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FlowCytometry, ImmunoOncology, MultipleComparison, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowMap_1.22.0.tar.gz |
| Windows Binary | flowMap_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | flowMap_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowMap |
| Source Repository (Developer Access) | git clone [email protected]:packages/flowMap |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowMap/ |
| Package Short Url | https://bioconductor.org/packages/flowMap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |