flagme

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flagme.

Analysis of Metabolomics GC/MS Data

Bioconductor version: 3.9

Fragment-level analysis of gas chromatography - mass spectrometry metabolomics data

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Citation (from within R, enter citation("flagme")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")

Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	DifferentialExpression, ImmunoOncology, MassSpectrometry, Software
Version	1.40.0
In Bioconductor since	BioC 2.4 (R-2.9) (15 years)
License	LGPL (>= 2)
Depends	gcspikelite, xcms, CAMERA
Imports	gplots, graphics, MASS, methods, SparseM, stats, utils
System Requirements
URL

Follow Installation instructions to use this package in your R session.

Source Package	flagme_1.40.0.tar.gz
Windows Binary	flagme_1.40.0.zip
Mac OS X 10.11 (El Capitan)	flagme_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access)	git clone [email protected]:packages/flagme
Bioc Package Browser	https://code.bioconductor.org/browse/flagme/
Package Short Url	https://bioconductor.org/packages/flagme/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive