fdrame
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see fdrame.
FDR adjustments of Microarray Experiments (FDR-AME)
Bioconductor version: 3.9
This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma
Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli
Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>
citation("fdrame")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fdrame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fdrame")| Annotation Overview | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, MultipleComparison, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (18.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | tcltk, graphics, grDevices, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | fdrame_1.56.0.tar.gz |
| Windows Binary | fdrame_1.56.0.zip |
| Mac OS X 10.11 (El Capitan) | fdrame_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/fdrame |
| Source Repository (Developer Access) | git clone [email protected]:packages/fdrame |
| Bioc Package Browser | https://code.bioconductor.org/browse/fdrame/ |
| Package Short Url | https://bioconductor.org/packages/fdrame/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |