drawProteins
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see drawProteins.
Package to Draw Protein Schematics from Uniprot API output
Bioconductor version: 3.9
This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.
Author: Paul Brennan [aut, cre]
Maintainer: Paul Brennan <brennanpincardiff at gmail.com>
citation("drawProteins")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("drawProteins")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("drawProteins")| Using drawProteins | HTML | R Script |
| Using extract_transcripts in drawProteins | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | FunctionalPrediction, Proteomics, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4) |
| Imports | ggplot2, httr, dplyr, readr, stringr, tidyr |
| System Requirements | |
| URL | https://github.com/brennanpincardiff/drawProteins |
| Bug Reports | https://github.com/brennanpincardiff/drawProteins/issues/new |
See More
| Suggests | covr, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | drawProteins_1.4.0.tar.gz |
| Windows Binary | drawProteins_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | drawProteins_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/drawProteins |
| Source Repository (Developer Access) | git clone [email protected]:packages/drawProteins |
| Bioc Package Browser | https://code.bioconductor.org/browse/drawProteins/ |
| Package Short Url | https://bioconductor.org/packages/drawProteins/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |