divergence
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see divergence.
Divergence: Functionality for assessing omics data by divergence with respect to a baseline
Bioconductor version: 3.9
This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.
Author: Wikum Dinalankara <wdinala1 at jhmi.edu>, Luigi Marchionni <marchion at jhu.edu>, Qian Ke <qke1 at jhu.edu>
Maintainer: Wikum Dinalankara <wdinala1 at jhmi.edu>, Luigi Marchionni <marchion at jhu.edu>
citation("divergence")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("divergence")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("divergence")| Performing Divergence Analysis | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6), SummarizedExperiment |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | divergence_1.0.0.tar.gz |
| Windows Binary | divergence_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | divergence_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/divergence |
| Source Repository (Developer Access) | git clone [email protected]:packages/divergence |
| Bioc Package Browser | https://code.bioconductor.org/browse/divergence/ |
| Package Short Url | https://bioconductor.org/packages/divergence/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |