covEB
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see covEB.
Empirical Bayes estimate of block diagonal covariance matrices
Bioconductor version: 3.9
Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.
Author: C. Pacini
Maintainer: C. Pacini <clarepacini at gmail.com>
citation("covEB")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("covEB")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("covEB")| covEB | R Script | |
| Reference Manual |
Details
| biocViews | Bayesian, GeneExpression, ImmunoOncology, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats, LaplacesDemon, Matrix |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | curatedBladderData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | covEB_1.10.0.tar.gz |
| Windows Binary | covEB_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | covEB_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/covEB |
| Source Repository (Developer Access) | git clone [email protected]:packages/covEB |
| Bioc Package Browser | https://code.bioconductor.org/browse/covEB/ |
| Package Short Url | https://bioconductor.org/packages/covEB/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |