cghMCR
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cghMCR.
Find chromosome regions showing common gains/losses
Bioconductor version: 3.9
This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.
Author: J. Zhang and B. Feng
Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>
Citation (from within R, enter
citation("cghMCR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cghMCR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cghMCR")| cghMCR findMCR | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | LGPL |
| Depends | methods, DNAcopy, CNTools, limma |
| Imports | BiocGenerics(>= 0.1.6), stats4 |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cghMCR_1.42.0.tar.gz |
| Windows Binary | cghMCR_1.42.0.zip |
| Mac OS X 10.11 (El Capitan) | cghMCR_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cghMCR |
| Source Repository (Developer Access) | git clone [email protected]:packages/cghMCR |
| Bioc Package Browser | https://code.bioconductor.org/browse/cghMCR/ |
| Package Short Url | https://bioconductor.org/packages/cghMCR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |