cellity
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cellity.
Quality Control for Single-Cell RNA-seq Data
Bioconductor version: 3.9
A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.
Author: Tomislav Illicic, Davis McCarthy
Maintainer: Tomislav Ilicic <ti243 at cam.ac.uk>
Citation (from within R, enter
citation("cellity")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellity")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellity")| An introduction to the cellity package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, GeneExpression, ImmunoOncology, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, SupportVectorMachine, Transcriptomics, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3) |
| Imports | AnnotationDbi, e1071, ggplot2, graphics, grDevices, grid, mvoutlier, org.Hs.eg.db, org.Mm.eg.db, robustbase, stats, topGO, utils |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, caret, knitr, testthat, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cellity_1.12.0.tar.gz |
| Windows Binary | cellity_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | cellity_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellity |
| Source Repository (Developer Access) | git clone [email protected]:packages/cellity |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellity/ |
| Package Short Url | https://bioconductor.org/packages/cellity/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |