cbaf
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cbaf.
Automated functions for comparing various data from cbioportal.org
Bioconductor version: 3.9
This package contains functions that allow analysing and comparing various gene groups from different cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.
Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]
Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>
citation("cbaf")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cbaf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cbaf")| cbaf | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Microarray, RNASeq, Software, microRNASeq |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | BiocFileCache, RColorBrewer, cgdsr, genefilter, gplots, grDevices, stats, utils, xlsx |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cbaf_1.6.0.tar.gz |
| Windows Binary | cbaf_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | cbaf_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cbaf |
| Source Repository (Developer Access) | git clone [email protected]:packages/cbaf |
| Bioc Package Browser | https://code.bioconductor.org/browse/cbaf/ |
| Package Short Url | https://bioconductor.org/packages/cbaf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |