bayNorm
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see bayNorm.
Single-cell RNA sequencing data normalization
Bioconductor version: 3.9
bayNorm is used for normalizing single-cell RNA-seq data.
Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]
Maintainer: Wenhao Tang <wt215 at ic.ac.uk>
citation("bayNorm")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bayNorm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bayNorm")| Introduction to bayNorm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5) |
| Imports | Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils |
| System Requirements | |
| URL | https://github.com/WT215/bayNorm |
| Bug Reports | https://github.com/WT215/bayNorm/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, devtools, testthat |
| Linking To | Rcpp, RcppArmadillo, RcppProgress |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bayNorm_1.2.0.tar.gz |
| Windows Binary | bayNorm_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | bayNorm_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bayNorm |
| Source Repository (Developer Access) | git clone [email protected]:packages/bayNorm |
| Bioc Package Browser | https://code.bioconductor.org/browse/bayNorm/ |
| Package Short Url | https://bioconductor.org/packages/bayNorm/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |