affypdnn
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affypdnn.
Probe Dependent Nearest Neighbours (PDNN) for the affy package
Bioconductor version: 3.9
The package contains functions to perform the PDNN method described by Li Zhang et al.
Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).
Maintainer: Laurent Gautier<lgautier at gmail.com>
citation("affypdnn")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affypdnn")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affypdnn")| affypdnn | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | LGPL |
| Depends | R (>= 2.13.0), affy(>= 1.5) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | affydata, hgu95av2probe |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affypdnn_1.58.0.tar.gz |
| Windows Binary | affypdnn_1.58.0.zip |
| Mac OS X 10.11 (El Capitan) | affypdnn_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affypdnn |
| Source Repository (Developer Access) | git clone [email protected]:packages/affypdnn |
| Bioc Package Browser | https://code.bioconductor.org/browse/affypdnn/ |
| Package Short Url | https://bioconductor.org/packages/affypdnn/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |