TreeSummarizedExperiment
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TreeSummarizedExperiment.
TreeSummarizedExperiment: a S4 Class for Data with Tree Structures
Bioconductor version: 3.9
TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.
Author: Ruizhu Huang [aut, cre]
Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>
Citation (from within R, enter
citation("TreeSummarizedExperiment")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TreeSummarizedExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TreeSummarizedExperiment")
Tree Aggregation | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.0.3 |
In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
License | GPL (>=2) |
Depends | R (>= 3.6.0), SingleCellExperiment, S4Vectors |
Imports | methods, utils, ape, dplyr, SummarizedExperiment |
System Requirements | |
URL |
See More
Suggests | ggtree, BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TreeSummarizedExperiment_1.0.3.tar.gz |
Windows Binary | TreeSummarizedExperiment_1.0.3.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | TreeSummarizedExperiment_1.0.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment |
Source Repository (Developer Access) | git clone [email protected]:packages/TreeSummarizedExperiment |
Bioc Package Browser | https://code.bioconductor.org/browse/TreeSummarizedExperiment/ |
Package Short Url | https://bioconductor.org/packages/TreeSummarizedExperiment/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |