TnT
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TnT.
Interactive Visualization for Genomic Features
Bioconductor version: 3.9
A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.
Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]
Maintainer: Jialin Ma <marlin- at gmx.cn>
citation("TnT")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TnT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TnT")| Introduction to TnT | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | AGPL-3 |
| Depends | R (>= 3.4), GenomicRanges |
| Imports | methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr |
| System Requirements | |
| URL | https://github.com/Marlin-Na/TnT |
| Bug Reports | https://github.com/Marlin-Na/TnT/issues |
See More
| Suggests | GenomicFeatures, shiny, BiocManager, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TnT_1.6.0.tar.gz |
| Windows Binary | TnT_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | TnT_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TnT |
| Source Repository (Developer Access) | git clone [email protected]:packages/TnT |
| Bioc Package Browser | https://code.bioconductor.org/browse/TnT/ |
| Package Short Url | https://bioconductor.org/packages/TnT/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |