Sushi
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Sushi.
Tools for visualizing genomics data
Bioconductor version: 3.9
Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures
Author: Douglas H Phanstiel <dphansti at stanford.edu>
Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>
citation("Sushi")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Sushi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Sushi")| Sushi | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), zoo, biomaRt |
| Imports | graphics, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | diffloop, Ularcirc |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Sushi_1.22.0.tar.gz |
| Windows Binary | Sushi_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | Sushi_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Sushi |
| Source Repository (Developer Access) | git clone [email protected]:packages/Sushi |
| Bioc Package Browser | https://code.bioconductor.org/browse/Sushi/ |
| Package Short Url | https://bioconductor.org/packages/Sushi/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |