SigFuge
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SigFuge.
SigFuge
Bioconductor version: 3.9
Algorithm for testing significance of clustering in RNA-seq data.
Author: Patrick Kimes, Christopher Cabanski
Maintainer: Patrick Kimes <patrick.kimes at gmail.com>
Citation (from within R, enter
citation("SigFuge")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SigFuge")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SigFuge")| SigFuge Tutorial | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, ImmunoOncology, RNASeq, Software, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.1.1), GenomicRanges |
| Imports | ggplot2, matlab, reshape, sigclust |
| System Requirements | |
| URL |
See More
| Suggests | org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SigFuge_1.22.0.tar.gz |
| Windows Binary | SigFuge_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | SigFuge_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SigFuge |
| Source Repository (Developer Access) | git clone [email protected]:packages/SigFuge |
| Bioc Package Browser | https://code.bioconductor.org/browse/SigFuge/ |
| Package Short Url | https://bioconductor.org/packages/SigFuge/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |