ScISI

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ScISI.

In Silico Interactome

Bioconductor version: 3.9

Package to create In Silico Interactomes

Author: Tony Chiang <tchiang at fhcrc.org>

Maintainer: Tony Chiang <tchiang at fhcrc.org>

Citation (from within R, enter citation("ScISI")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ScISI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ScISI")

ScISI Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DecisionTree, GraphAndNetwork, NetworkInference, Proteomics, Software
Version	1.56.0
In Bioconductor since	BioC 1.8 (R-2.3) (18 years)
License	LGPL
Depends	R (>= 2.10), GO.db, RpsiXML, annotate, apComplex
Imports	AnnotationDbi, GO.db, RpsiXML, annotate, methods, org.Sc.sgd.db, utils
System Requirements
URL

Suggests	ppiData, xtable
Linking To
Enhances
Depends On Me	PCpheno, ppiStats, SLGI
Imports Me	PCpheno, SLGI
Suggests Me	RpsiXML
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ScISI_1.56.0.tar.gz
Windows Binary	ScISI_1.56.0.zip
Mac OS X 10.11 (El Capitan)	ScISI_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ScISI
Source Repository (Developer Access)	git clone [email protected]:packages/ScISI
Bioc Package Browser	https://code.bioconductor.org/browse/ScISI/
Package Short Url	https://bioconductor.org/packages/ScISI/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive