STRINGdb

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see STRINGdb.

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: 3.9

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, enter citation("STRINGdb")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

STRINGdb Vignette	PDF	R Script
Reference Manual	PDF

biocViews	Network, Software
Version	1.24.0
In Bioconductor since	BioC 2.13 (R-3.0) (10.5 years)
License	GPL-2
Depends	R (>= 2.14.0)
Imports	png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix
System Requirements
URL

Suggests	RUnit, BiocGenerics
Linking To
Enhances
Depends On Me	PPInfer, scsR
Imports Me	coexnet, glmSparseNet, IMMAN, pwOmics, RITAN, XINA
Suggests Me	epiNEM, GeneNetworkBuilder, netSmooth, PCAN
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	STRINGdb_1.24.0.tar.gz
Windows Binary	STRINGdb_1.24.0.zip
Mac OS X 10.11 (El Capitan)	STRINGdb_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/STRINGdb
Source Repository (Developer Access)	git clone [email protected]:packages/STRINGdb
Bioc Package Browser	https://code.bioconductor.org/browse/STRINGdb/
Package Short Url	https://bioconductor.org/packages/STRINGdb/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive