SCnorm

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SCnorm.

Normalization of single cell RNA-seq data

Bioconductor version: 3.9

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")

biocViews	ImmunoOncology, Normalization, RNASeq, SingleCell, Software
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (6.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4.0)
Imports	stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, SingleCellExperiment, SummarizedExperiment, S4Vectors, ggplot2, forcats
System Requirements
URL	https://github.com/rhondabacher/SCnorm
Bug Reports	https://github.com/rhondabacher/SCnorm/issues

Suggests	BiocStyle, knitr, rmarkdown, devtools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	SCnorm_1.6.0.tar.gz
Windows Binary	SCnorm_1.6.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	SCnorm_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access)	git clone [email protected]:packages/SCnorm
Bioc Package Browser	https://code.bioconductor.org/browse/SCnorm/
Package Short Url	https://bioconductor.org/packages/SCnorm/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive