SCBN
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SCBN.
A statistical normalization method and differential expression analysis for RNA-seq data between different species
Bioconductor version: 3.9
This package provides a scale based normalization (SCBN) method to identify genes with differential expression between different species. It takes into account the available knowledge of conserved orthologous genes and the hypothesis testing framework to detect differentially expressed orthologous genes. The method on this package are described in the article 'A statistical normalization method and differential expression analysis for RNA-seq data between different species' by Yan Zhou, Jiadi Zhu, Tiejun Tong, Junhui Wang, Bingqing Lin, Jun Zhang (2018, pending publication).
Author: Yan Zhou
Maintainer: Yan Zhou <2160090406 at email.szu.edu.cn>
citation("SCBN")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SCBN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SCBN")| SCBN Tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, Normalization, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.5.0) |
| Imports | stats |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SCBN_1.2.0.tar.gz |
| Windows Binary | SCBN_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | SCBN_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SCBN |
| Source Repository (Developer Access) | git clone [email protected]:packages/SCBN |
| Bioc Package Browser | https://code.bioconductor.org/browse/SCBN/ |
| Package Short Url | https://bioconductor.org/packages/SCBN/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |