Rmagpie
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Rmagpie.
MicroArray Gene-expression-based Program In Error rate estimation
Bioconductor version: 3.9
Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.
Author: Camille Maumet <Rmagpie at gmail.com>, with contributions from C. Ambroise J. Zhu
Maintainer: Camille Maumet <Rmagpie at gmail.com>
citation("Rmagpie")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rmagpie")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rmagpie")| Rmagpie Examples | R Script | |
| Reference Manual |
Details
| biocViews | Classification, Microarray, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (15 years) |
| License | GPL (>= 3) |
| Depends | R (>= 2.6.1), Biobase(>= 2.5.5) |
| Imports | Biobase(>= 2.5.5), e1071, graphics, grDevices, kernlab, methods, pamr, stats, utils |
| System Requirements | |
| URL | http://www.bioconductor.org/ |
See More
| Suggests | xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rmagpie_1.40.0.tar.gz |
| Windows Binary | Rmagpie_1.40.0.zip |
| Mac OS X 10.11 (El Capitan) | Rmagpie_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rmagpie |
| Source Repository (Developer Access) | git clone [email protected]:packages/Rmagpie |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rmagpie/ |
| Package Short Url | https://bioconductor.org/packages/Rmagpie/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |