RefPlus
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RefPlus.
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Bioconductor version: 3.9
The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.
Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>
Maintainer: Kai-Ming Chang <kaiming at gmail.com>
citation("RefPlus")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RefPlus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RefPlus")| RefPlus Manual | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.54.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | affydata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RefPlus_1.54.0.tar.gz |
| Windows Binary | RefPlus_1.54.0.zip |
| Mac OS X 10.11 (El Capitan) | RefPlus_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RefPlus |
| Source Repository (Developer Access) | git clone [email protected]:packages/RefPlus |
| Bioc Package Browser | https://code.bioconductor.org/browse/RefPlus/ |
| Package Short Url | https://bioconductor.org/packages/RefPlus/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |