Rcwl
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Rcwl.
Wrap Command Tools and Pipelines Using CWL
Bioconductor version: 3.9
The package can be a simple and user-friendly way to manage command line tools and build data analysis pipelines in R using Common Workflow Language (CWL).
Author: Qiang Hu [aut, cre], Qian Liu [aut]
Maintainer: Qiang Hu <qiang.hu at roswellpark.org>
Citation (from within R, enter
citation("Rcwl")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rcwl")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rcwl")| User Guide for Rcwl | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ImmunoOncology, Software, WorkflowStep |
| Version | 1.0.14 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-2 | file LICENSE |
| Depends | R (>= 3.6), yaml, methods, S4Vectors |
| Imports | utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools |
| System Requirements | python (>= 2.7), cwltool (>= 1.0.2018) |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | RcwlPipelines |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rcwl_1.0.14.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | Rcwl_1.0.14.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rcwl |
| Source Repository (Developer Access) | git clone [email protected]:packages/Rcwl |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rcwl/ |
| Package Short Url | https://bioconductor.org/packages/Rcwl/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |